MmuEX6033565 @ mm10
Exon Skipping
Gene
ENSMUSG00000046585 | Cfap58
Description
cilia and flagella associated protein 58 [Source:MGI Symbol;Acc:MGI:2685815]
Coordinates
chr19:47948116-47953124:+
Coord C1 exon
chr19:47948116-47948272
Coord A exon
chr19:47949286-47949480
Coord C2 exon
chr19:47952987-47953124
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCCCCCCCCCGCAGTTC
3' ss Score
9.28
5' ss Seq
AAGGTGACG
5' ss Score
7
Exon sequences
Seq C1 exon
CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG
Seq A exon
TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG
Seq C2 exon
ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046585-'2-15,'2-5,5-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=0.938 C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACCAGCTCTTGTCAGAA
R:
CAGGGCCTTCTGCTGGTTTTC
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types