DreEX6033100 @ danRer10
Exon Skipping
Gene
ENSDARG00000069435 | cfap58
Description
cilia and flagella associated protein 58 [Source:ZFIN;Acc:ZDB-GENE-060929-128]
Coordinates
chr1:47146283-47152869:+
Coord C1 exon
chr1:47146283-47146439
Coord A exon
chr1:47149345-47149539
Coord C2 exon
chr1:47152732-47152869
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTCTCTCTCACAGCTT
3' ss Score
12.3
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGTGGGCGATCTGTTAAAGATCAAAGAGGAGCTGACCGAGCAGAGAGACAAGCTTCTGTCGGAGGTGGTGACACTTCGGGAAAACCTTACTAAAGCCACCGGTGCTCAGCAGGAGATCGAGGCTGAGAAGAACAAAGCCATGGACATGATTGCTCAG
Seq A exon
CTTCAGCAGGAAATCCAGGTGCGTCAGAATGAGGTTCATCGGGAGACCAGGAGGAAGGAGAAGTTGGAAAAGGAAGTGAAGCAGTTTCAAACTGACCTGGAGTCCAAACAATCAGAGATTAAATTACTGACTCAGCAGAGCCAGCGTTTGCAGGATGATCAGCAGAAACTGGAACAACTGCTCCAGGAACACAAA
Seq C2 exon
ATTATAAATGAGAAAAGCAGTAAAGAAATGGAACAGCTCCAACATCGCAACACCAAACTGCAGCAAGATAATGAACAAAACTCCATCAACCTAGAGCAACTCTCCCAACAGAACCAACAGCGAGCATCAGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069435-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.682 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGCTTCTGTCGGAGGTG
R:
TCTGATGCTCGCTGTTGGTTC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]