HsaEX6090365 @ hg38
Exon Skipping
Gene
ENSG00000120051 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr10:104364733-104368560:+
Coord C1 exon
chr10:104364733-104364889
Coord A exon
chr10:104365814-104366008
Coord C2 exon
chr10:104368423-104368560
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTCCGCAACCTCTAGTTC
3' ss Score
6.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CATCCGAGATTTACTGAGGTTCAAAGAAGAAGTGACAAAGGAGAGAGACCAGCTCTTATCAGAAGTGGTAAAATTACGAGAATCCCTAGCTCAGACCACTGAACAGCAGCAGGAAACAGAGCGATCAAAAGAGGAGGCTGAACATGCCATCAGTCAG
Seq A exon
TTCCAACAAGAAATCCAGCAACGTCAGAACGAAGCTTCCCGGGAGTTCCGGAAGAAGGAAAAACTAGAGAAAGAGCTCAAGCAGATTCAGGCAGACATGGACAGCAGGCAGACAGAAATAAAAGCCCTGCAGCAGTATGTGCAGAAGAGCAAGGAGGAGCTTCAGAAGCTGGAGCAGCAGCTGAAGGAGCAGAAG
Seq C2 exon
ATATTGAATGAGAGAGCTGCAAAGGAACTCGAGCAATTTCAGATGAGAAATGCTAAACTTCAGCAAGAGAATGAACAGCACAGTTTGGTCTGTGAGCAGCTATCCCAGGAAAACCAACAGAAGGCGTTGGAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-'10-4,'10-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.477 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAAGGAGAGAGACCAGCT
R:
CTCCAACGCCTTCTGTTGGTT
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains