BtaEX6100673 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007243 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr26:25191870-25195235:+
Coord C1 exon
chr26:25191870-25192026
Coord A exon
chr26:25192920-25193114
Coord C2 exon
chr26:25195098-25195235
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTCTATGCCCGTAGTTC
3' ss Score
9.55
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
TATCCGGGATTTGCTGAAGTTCAAAGAAGAAGTGACAAAGGAGCGAGACCAGCTGTTATCAGAAGTGGTGAAATTGCGAGAGTGCTTAGCTCAGACCATTGAACAGCAGCAAGAAATGGAGCGGTCCAGGGAAGAGGCAGAGCAGGCCATCATCCAG
Seq A exon
TTCCAACAAGAAATCCAGCAACGTCAGAATGAAGCTTCACGGGAGACCCGGAAGAAAGAAAAACTAGAGAAGGAGCTCAGGCAGATTCAGATGGACATGGACAGCAGGCAGACGGAAATCAGGGCGCTGCAGCAGTACGTGCAGAAGAGCAAGGAGGAGCTTCAGAGGCTGGAGCAGCAGCTGAAAGAGCAGAAG
Seq C2 exon
ATACTCAACGAGAGAGCCGCAAAGGAGCTGGAGCAGTTTCAGATGAGAAATGCTAAACTTCAGCAAGAGAACGAACAGCACAGTTTGGTTTGTGAGCAGCTATCCCAAGAAAACCAGCAGAAGGCGTTGGAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007243-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.477 C2=0.696
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(42.3=100)
A:
PF115593=ADIP=FE(52.0=100)
C2:
PF115593=ADIP=PD(0.8=2.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCGAGACCAGCTGTTAT
R:
TTTGAGCTCCAACGCCTTCTG
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]