GgaEX1015033 @ galGal4
Exon Skipping
Gene
ENSGALG00000008417 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr6:23833146-23838306:+
Coord C1 exon
chr6:23833146-23833302
Coord A exon
chr6:23835295-23835489
Coord C2 exon
chr6:23838169-23838306
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTATTATTACAGCTT
3' ss Score
8.35
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TATCAGTGAGTTGATAAAATACAAAGAAGAGATAACAAAGGAGAGAGATCAACTCTTGTCAGAGGTCGTGGAGTTACGTCAAAGTCTAACTCAAGCCACAGAGCAGCAGCAGGATGCAGAGAGGGCAAAGGATGAGGCAGATCAAGCTATTATGCAG
Seq A exon
CTTCAGCAAGAAATCCAAATGCGAAACAATGAGGTATCACGAGAAGTTCGGAAGAAAGAAAAAATGGAGAAGGAGCTGAAAAATCTTCAAGCTGAAATAGTTAATAAGCAGACTGAGATCAAGAATTTACAGCAACGTATACAGAAGAACAAAGAGGAACAACTGAAAGTGGAACAACATCTAAAAGAGCAGATG
Seq C2 exon
ATGTTGAATGAAAGAACTGGTAAGGAACTTGAGCAATTTCAGATGAGAAATAATAAGCTTGTGCAAGAGAGTGAGCATCACAGTGTGATGTTTCAAGGAGTAGTGCAGGATCTTCAGAAAAAGACAGCGGAACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'4-5,'4-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.738 C2=0.717
Domain overlap (PFAM):
C1:
PF148171=HAUS5=FE(34.2=100),PF131661=AAA_13=FE(22.0=100)
A:
PF148171=HAUS5=PD(8.6=20.0),PF131661=AAA_13=FE(27.1=100)
C2:
PF131661=AAA_13=PD(18.2=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTTGTCAGAGGTCGTGGA
R:
TCAGTTCCGCTGTCTTTTTCTGA
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]