BtaEX6100897 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019322 | HABP2
Description
Bos taurus hyaluronan binding protein 2 (HABP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001014868]
Coordinates
chr26:34329695-34331780:+
Coord C1 exon
chr26:34329695-34329814
Coord A exon
chr26:34330322-34330493
Coord C2 exon
chr26:34331683-34331780
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCTTGCCTGCTCTCTCCGAGGTC
3' ss Score
1.64
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGGTTCCTGTGTGCAGGCCAAATCCCTGCCAAAACGGTGGCACCTGCTCCCGGCAGAGGCGGAGGTCCAAGTTCACCTGTGCCTGTCCTGACCAGTTCAAGGGGAAGCTCTGTGAAATAG
Seq A exon
GTCCTGATGACTGCTACGTTGACGACGGCTACTCTTACCGAGGGAGAGTGAGTAAGACCATCCACCAGCACACATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGAAGTACAACATGTTTATGGAGGACGCTGAGGCCCACGGGATTGGGGAGCACAATTTCTGCAG
Seq C2 exon
AAACCCAGATGGAGACAAAAAGCCCTGGTGTTTCATTAAAGTAAACAATGTGAAGGTGAAATGGGAGTACTGTGATGTCCCTGCCTGCTCTGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019322-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.5)
A:
PF0005113=Kringle=PU(63.9=91.4)
C2:
PF0005113=Kringle=PD(34.9=85.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGCAGGCCAAATCCC
R:
TAGGGCAGAGCAGGCAGG
Band lengths:
211-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]