GgaEX1027975 @ galGal3
Exon Skipping
Gene
ENSGALG00000008905 | F1NEB3_CHICK
Description
NA
Coordinates
chr6:28907345-28908692:+
Coord C1 exon
chr6:28907345-28907464
Coord A exon
chr6:28908015-28908186
Coord C2 exon
chr6:28908598-28908692
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATCTCAACATGGTTTTACAGAAC
3' ss Score
6.58
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
CTTCTTCACAGTGCCGGCCAAACCCATGCAAAAATGGAGGAATCTGTGTGCGGCACAGAATCAGATCAAAATTCACCTGCAAGTGCCCTGAACGTTACCGAGGGAGGTTTTGTGAGATTG
Seq A exon
AACCAGATGATTGTTATGAAGAGGACTCCTTTTATTACAGAGGAAGAGTGAACCAAGCACAGAGTGGCAGGACTTGCCTGCACTGGAATTCCCACTTGCTCTTGCGCTTCTCTATTAATGCATTTATGGAGGATGCTGAGTCTTATGGGATTGGGGAACATAACTTCTGCAG
Seq C2 exon
AAATCCTGATGAGGATCAAAAGCCCTGGTGTTTCATTAGAAACAATGGCAAAGTGCAATGGGACTTCTGTGATGTTTCACCATGCTCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.5)
A:
PF0005113=Kringle=PU(64.6=91.4)
C2:
PF0005113=Kringle=PD(34.1=84.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCACAGTGCCGGCC
R:
CCAGAGCATGGTGAAACATCAC
Band lengths:
210-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]