RnoEX0040784 @ rn6
Exon Skipping
Gene
ENSRNOG00000016659 | Habp2
Description
hyaluronan binding protein 2 [Source:RGD Symbol;Acc:1302979]
Coordinates
chr1:277095078-277096897:+
Coord C1 exon
chr1:277095078-277095197
Coord A exon
chr1:277095724-277095788
Coord C2 exon
chr1:277096800-277096897
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTCCCACCTCCTCTTGCAGGAG
3' ss Score
10.43
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TGCTTCCGGTATGCAGACCAAATCCCTGCCAGAATGGCGGGGTCTGTTCCCGACACAGACGGAGGTCCAGGTTTAGCTGCGCCTGTCCAGACCAGTATAAGGGGAGATTCTGTGAAATAG
Seq A exon
GAGAATTACAACATGTTTATGGAGGATGCCGAGACCCATGGGATCGCAGATCACAACTTCTGCAG
Seq C2 exon
AAACCCAGATGGAGACCACAAGCCGTGGTGTTTCGTTAAGGTGAACAGTGAGAAGGTGAAATGGGAGTATTGTAATGTCGAGGTCTGCCCAGAGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016659-'5-8,'5-7,6-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.5)
A:
PF0005113=Kringle=PU(63.9=91.4)
C2:
PF0005113=Kringle=PD(34.9=85.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATGGCGGGGTCTGTTC
R:
TGGGCAGACCTCGACATTACA
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]