MmuEX6033752 @ mm9
Exon Skipping
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56385592-56387456:+
Coord C1 exon
chr19:56385592-56385711
Coord A exon
chr19:56386161-56386332
Coord C2 exon
chr19:56387359-56387456
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGCGGCCTGCTCTCTCCGAGGTC
3' ss Score
-0.43
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG
Seq A exon
GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG
Seq C2 exon
AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075-'6-13,'6-10,7-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.001 C2=0.006
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.5)
A:
PF0005113=Kringle=PU(63.9=91.4)
C2:
PF0005113=Kringle=PD(34.9=85.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAGGCCAAACCCCT
R:
GCACTGGACAGACTGTGACAT
Band lengths:
206-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: