DreEX6070064 @ danRer10
Exon Skipping
Gene
ENSDARG00000057498 | habp2
Description
hyaluronan binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4721]
Coordinates
chr12:31601701-31602619:+
Coord C1 exon
chr12:31601701-31601817
Coord A exon
chr12:31601911-31602064
Coord C2 exon
chr12:31602525-31602619
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTTATATCATTTTATTTAGGTT
3' ss Score
8.89
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCTATGCATGTAATCCAAGTCCATGCCAGAATGGGGGAACGTGTGTTAAAGGCCGTACGAGAGCAAGTTTCACATGCACTTGTCCTGAAGATTATAGTGGGAGGTTCTGCCAAGTTG
Seq A exon
GTTCAAACGATTGCTATGAAGGGAATGGGGAATCATACAGAGGCAATGTCAGTGAAACAATAGAAGAAATTGAGTGTTTACCCTGGAACCACAATCTTATTCCTTACAAAGAGTTTGAAGGGAATGAGAGCATTGGAGAACACAATTACTGCAG
Seq C2 exon
GAATCCAGATGGAGACCGAGAACCTTGGTGCTTTGTAAAGGAAAAGGGAAAGCTTCAGTGGAACTACTGCAATGTCAAGCCATGCTCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057498-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=82.5)
A:
PF0005113=Kringle=PU(61.8=90.4)
C2:
PF0005113=Kringle=PD(36.8=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCATGTAATCCAAGTCCATGC
R:
TGTTTCAGAGCATGGCTTGACA
Band lengths:
210-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]