BtaEX6100927 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34356252-34357986:-
Coord C1 exon
chr26:34357882-34357986
Coord A exon
chr26:34357431-34357538
Coord C2 exon
chr26:34356252-34356563
Length
108 bp
Sequences
Splice sites
3' ss Seq
TACATGTGTTCTTACCGTAGGCA
3' ss Score
8.79
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CGCCTCTATAAAGCAGCGGGGGAAGATGCGAGACACCAGTACACAATGACCCTGGGCCTGCCCGAGTTTGTCCGAGCGAAAACAAACGCGGCCAATCTGAGTGAC
Seq A exon
GCAAAATACAAGGAGTCTTGGAGGAATCTCCATGCTCAAGGCTACAAGCTAACAATAGATGCTCTGCCCTTCCAGGCGGCTCGAGTCTCTGGAGACATAGCCAGTGAT
Seq C2 exon
TTTCTCTACAGACATGACTTTGTGAAGGAGCGAGGACGGCTGATCGGGGCCCAGAGCGTGAGTGACGACCCCCGGCTCCAGCACTGTCAGCGGGTGGGCCAGCTGCAGAGCGAGCTTCAGTACAGGAGGCAGGCGGCAGGCAGCAGAGCGCAGTGCCACCTGCCCATGGACATGGTGCCACTGGTCCATGCCCGGAAGGCCCAGGCCCTGGCCAGCGACCTTGACTACAGGACACAGTGCCACGCGTTCACAGCGCTGCCCGAGGACCTGAGGATGGCCTGGGCCAAGAAGGCCCATGCCCTGCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'40-40,'40-38,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.7=42.9)
A:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.0),PF0088013=Nebulin=WD(100=22.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAAACGCGGCCAATCTGA
R:
TCCTGTAGTCAAGGTCGCTGG
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]