MmuEX6033784 @ mm10
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56335026-56336586:-
Coord C1 exon
chr19:56336482-56336586
Coord A exon
chr19:56336043-56336150
Coord C2 exon
chr19:56335026-56335337
Length
108 bp
Sequences
Splice sites
3' ss Seq
TACCTGTGTTCCCACTTTAGGCA
3' ss Score
9.36
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGTCTCTATAAAGCGGCTGGCGAGGACGCACGGCACCAATACACGATGACCCTTGGTCTGCCTGAGTTCATCCGAGCCAAAACCAACGCAGCCAACCTGAGCGAG
Seq A exon
GCAAAATACAAGGAGGCTTGGCATAATCTTCGTGCTCAAGGCTACAAGCTGACGATAGACGCCCTCCCCTTCCAGGCTGCTCGGGCCTCTGGAGACATAGCCAGTGAC
Seq C2 exon
TTTCTCTACAGGCACGAGTTTGTGAAGGAGCGTGGACAGCTCATTGGGGTGCGGAATGTGAGTGACGACCCGCGGCTACTGCACTGCCTACGGATGGGCCAGCTGCAGAGTGAGAATCAGTACAGGAAGGAGGCGGCCAGCAGCCAAGCTCAGTGCCACCTGCCCATGGATATGATGTACCTGGTCCATGCCAGGAAGGCCCAGGCCCTGGCCAGTGACCACGACTACCGGACACAGTGCCACGAGTTCACCGCCCTGCCTGAGGATCTGAAGATGGCCTGGGCCAAGAAAGCGCACGCCCTGCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
A:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=WD(100=22.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCCTGAGTTCATCCGAG
R:
TGGCATGGACCAGGTACATCA
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types