GgaEX1040322 @ galGal4
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr6:26997770-27000279:-
Coord C1 exon
chr6:27000175-27000279
Coord A exon
chr6:26999714-26999821
Coord C2 exon
chr6:26997770-26998081
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATGTGCCTCTCCTACTTTAGGTG
3' ss Score
11.2
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CGCCTTTATAAAGCAGCGGGAGAGGACATTCAGCATCACTATACACCAACACTGGGTCTGCCTGAGTTCACACAAGCAAGAATAAACGCAGCCAACCTCAGTGAT
Seq A exon
GTGAAATACAGGGAATCTTGGCATAATCTATGTGCTCAAGGCTACAAGCTGACAATGGAAGCACTCCCTTTCCAGACTGCGAGGGCCTCCAGAGAAATTGCCAGTGAT
Seq C2 exon
TACCAGTATAAACACAATTTTGTGATGGAGAGAGGAAAGCACATTGGGGCCCGAAGTGTTCTGGATGATACCAGGTTGCTGCATTGCTTGCATGCTGCCAAATTACAGAGTGAACAGGAGTATAAGAAAGGATCCCAAGGAGTGTGGTCTCAGTACTACCTGCCCATGGACATGGTGAATCTTGTCCATGCAAGGAAAGCCCAGGCCTTAGCAAGTGATCAAGAATATAGAAAGAGACTCCATGAATTTACAGCGCTCCCAGAAGACTTGAAGATGAAATGGGCCAAAAGAGCCCACATGCTACAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(57.7=42.9)
A:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTATAAAGCAGCGGGA
R:
CTGAGACCACACTCCTTGGGA
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]