GgaEX1040322 @ galGal3
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28920998-28923507:-
Coord C1 exon
chr6:28923403-28923507
Coord A exon
chr6:28922942-28923049
Coord C2 exon
chr6:28920998-28921309
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATGTGCCTCTCCTACTTTAGGTG
3' ss Score
11.2
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CGCCTTTATAAAGCAGCGGGAGAGGACATTCAGCATCACTATACACCAACACTGGGTCTGCCTGAGTTCACACAAGCAAGAATAAACGCAGCCAACCTCAGTGAT
Seq A exon
GTGAAATACAGGGAATCTTGGCATAATCTATGTGCTCAAGGCTACAAGCTGACAATGGAAGCACTCCCTTTCCAGACTGCGAGGGCCTCCAGAGAAATTGCCAGTGAT
Seq C2 exon
TACCAGTATAAACACAATTTTGTGATGGAGAGAGGAAAGCACATTGGGGCCCGAAGTGTTCTGGATGATACCAGGTTGCTGCATTGCTTGCATGCTGCCAAATTACAGAGTGAACAGGAGTATAAGAAAGGATCCCAAGGAGTGTGGTCTCAGTACTACCTGCCCATGGACATGGTGAATCTTGTCCATGCAAGGAAAGCCCAGGCCTTAGCAAGTGATCAAGAATATAGAAAGAGACTCCATGAATTTACAGCGCTCCCAGAAGACTTGAAGATGAAATGGGCCAAAAGAGCCCACATGCTACAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.7=42.9)
A:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTATAAAGCAGCGGGA
R:
CTGAGACCACACTCCTTGGGA
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]