RnoEX6007857 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277119918-277121622:-
Coord C1 exon
chr1:277121518-277121622
Coord A exon
chr1:277121086-277121193
Coord C2 exon
chr1:277119918-277120229
Length
108 bp
Sequences
Splice sites
3' ss Seq
TACATCTGCTCCCATTTTAGGCA
3' ss Score
9.49
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGTCTCTATAAAGCAGCTGGTGAGGATGCGCGGCACCAATACACGATGACCCTTGGTCTGCCTGAATTCATCCGAGCCAAAACAAACGCAGCCAACCTGAGCGAG
Seq A exon
GCAAAATACAAGGAGTCTTGGCATAATCTTCGTGCTCAAGGCTACAAGCTAACGATAGACGCCCTCCCTTTCCAGGCTGCGCGGGCCTCTGGAGACATAGCCAGTGAC
Seq C2 exon
TTTCTCTACAGGCACGAGTTTGTGAAGGAGCGCGGGCAGCTCATTGGGGTGCGGAGTGTGAGTGACGACCCACGGCTGCGGCACTGCCAACGGATGGGCCAGCTGCAGAGTGAGAATTGGTACAGGAAGGAGGCGGCCAGCAGCCAAGCTCAGTACCACCTGCCCATGGATATGGTGCCCCTGGTCCATGCCAGGAAGGCCCAGGCCCTGGCTAGTGACCACGACTACCGGACACAGTGCCATGAGTTCACCGCGCTGCCTGAGGATCTGAAGATGGCCTGGGCCAAGAAAGCGCATGCCCTGCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-'39-43,'39-41,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
A:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=WD(100=22.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACAAACGCAGCCAACCTG
R:
TAGTCGTGGTCACTAGCCAGG
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]