BtaEX6100972 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35044751-35047805:+
Coord C1 exon
chr26:35044751-35045302
Coord A exon
chr26:35045930-35046055
Coord C2 exon
chr26:35047393-35047805
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGTCTTCCCTTGCAGAAG
3' ss Score
12.71
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
AGTGGGGCCCGAGAACTTCGCCCAGATGCAGAGCTTCGTGAGAAGCTGTGTCCTCCGGTTTGACGTGAACCCCGATGTGACGCAGATCGGTCTGGTGGTGTACGGCAGCCGTGTCCAGACAGCCTTCGGGCTGGACACCCACCTCAGCCGTGCTGCAGTGCTGCGGGCCCTGAGCCAGGCCCCCTACCTGGGAGGGGTGGGCTCAGCAGGCACGGCCTTGCTGCACATCTATGACAAGGTGATGACGGTCCAGGGCGGTGCCCGGCCTGGCGTCCCCAAGGCGGTGGTGGTGGTCACGGGTGGGAGCGGGGTGGAGGACGCGGCTGTCCCGGCCCAGAAGCTGAGGGACAACGGCGTCTCGGTCTTGGTGGTGGGTGTGGGGCCCGTCCTGAGGGAGGCACTGTGGAGGCTTGCGGGTCCCCGTGACGCCCTGATCCACGCAGCAGCCTATGCAGACCTGAGTCACCACCAGGATGCACTCATCGAGTGGATATGCAGAG
Seq A exon
AAGCCAAGCGGCCAGTTAACCTCTGCAAACCCAGCCCATGCATGAACGAGGGCATCTGTGTCCTGCGCAACGGGAGCTACCGCTGCGAGTGCCAGGGTGGCTGGGAGGGCCCCCACTGCGAGAACC
Seq C2 exon
GGGCCTTGAGAGGAGATGCCCTCAAGGCACGTGGCTCCAGCCGAGAGCCTGCAGGAGGGCAGCCACCGCGCCCCTCCCGGCTGGGCCTACAGAGAAGGCCTGGGCCCCCTGGGCGCTGAAAGGGAGCCTGCCCTCAGCACAGCACCCTGTCTGTGGTCTCTGCCTCCAGCCCCGTCTGAACCCTCCTGCCCACTGTCCTGCCCCAGGGAGAAGAGAGGGCTCAGCTGCCAACAGAGCTGCCCAGGGACATGGTAGCAGCTGGTTGCCCCCCTCACAACCACACTGAGAACTCATCACATGTTTGCTGACCTAATTGTGCACTGTGGAGCTGGTGCCGTCTGCCGCGTGTCCCCCGAGGAGCAGCAGAGGAACCTGGAGACTTCTGATGGCCTGTTTGAAGCTCACGTTACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860-'14-20,'14-17,15-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.897
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=93.5)
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACCAGGATGCACTCATC
R:
CTCTCTTCTCCCTGGGGCAG
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]