GgaEX0013181 @ galGal3
Exon Skipping
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29207365-29211023:+
Coord C1 exon
chr6:29207365-29207916
Coord A exon
chr6:29210643-29210765
Coord C2 exon
chr6:29211004-29211023
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTGACTGTATTTGTTGCAGAAG
3' ss Score
8.26
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
AGTTGGCCTGGCGAATTTTCTGCAGCTGAGGGACTTTGTCAGGAGCAGCTCTTGGCAATTCACCATCAACCGGGATGTCACCCAAATTGCCCTTGTGGCCTATGGTAGCAGAGCTCGCACCGTGTTCGCTTTGGACACCTACACAAACAATTCAGCTCTCCTCCAAGCCATCAACCAGATGCCTTTCCTTGGGGACGTGGCCTCTGCCAGCAGTGCCTTACTCCACATTCACAGTGATGTGATGACGGTACAGAAAGGAGCAAGGCCTGGTGTCAGCAAGGTGGTGGTGCTGCTCACAAATGGAGGTGGCATGGAGGATGCAGCTGCCCCGGCTCGGCACCTGAGAGACAACGGTGTCATGGTGTTTGTGGTTGTCATTGGGGATGCAGAGAGGGACACACTGCTGAGGGTTGCTGGGTCTCCCAGTTACCTGGTGCACATCTCTTCCTATGAAGATCTGCAGCGTTACCAAGACCTCATCACTGAAAGAATCTGTGAAG
Seq A exon
AAGCAAAAAGCCCTGTGAACCTGTGCAAACCCAACCCGTGCATGAACCAGGGCGTGTGCATCCTCAGGCCAGGAAGCTACTGGTGTGAATGCCATGGATGGGAAGGACCCCACTGCGAGAGCA
Seq C2 exon
GAGTTCCCCGAGGTGATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.429
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=93.5)
A:
PF0000822=EGF=WD(100=71.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTCAGCAAGGTGGTG
R:
GGAATCACCTCGGGGAACTC
Band lengths:
254-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]