DreEX0084676 @ danRer10
Exon Skipping
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30197406-30200223:-
Coord C1 exon
chr12:30199672-30200223
Coord A exon
chr12:30199480-30199602
Coord C2 exon
chr12:30197406-30197545
Length
123 bp
Sequences
Splice sites
3' ss Seq
AACTGTTGTTCTTTTTACAGATG
3' ss Score
10.13
5' ss Seq
CACGTCAGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TGTCGGCAAGGAGAATTTCATTCACTTTCAGGATTTTGTTCGGAGCACTTCAGTGCAGTTTGACATTAATCGAGATGTGGCTCAGGTGGGATTGGTGGTTTATGGGAGGCGTCCAGTCACGGTCTTTGACTTGGACAAGTACAATTCGGGCTCCGCTGTGCTGAGGGCTGTGGGGGACGCCGCTTTTCTGGGTGGGAAGGCTTCTGTAGGTTCAGCCCTGCTCCATGTGCTCTCCCAAAGCCTGACGGTGGGGAAGGGAGCACGTCCTGGAGTCAACAAGGCTGTGGTGGTGCTGACTGATGGGACGGGTGTGGAGGACGCTGCGGTGCCTGCACAGAAGATCCGTGATAGCGGAGTGTCCATATTCTTAATTGGAGTTGGGGACATCCAGCAGGAGCTTCTTCTCCGCATCTCTGGCTCTGAGGATCACATGATCACCGTGCCTTCATACGATGACCTAAAATACTCAGAGGATGTGCTGGTACAGATGGTGTGTTCAG
Seq A exon
ATGTGAAGAAGCCTGTAAACCTTTGCAGTCCAAACCCCTGTATGAATGATGGCATCTGTGTGATGCTGAATGGGAGTTACCGCTGCGAATGCCGTGGCTGGAAGGGTCCACACTGCGAAACAC
Seq C2 exon
GGAGCAGAGAGCAGCCATCCAGAGGAGATCTTCCTAAACCTGCAGGCCTGAGGCGACGGCAACCCAAGACTGAGAAAGAGCTGCTGCAGCGCTATAAAGAGCAGCGCAGGAGACACACGTCCAAAACACAGATCAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=1.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=94.1)
A:
PF0000822=EGF=WD(100=71.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGTGGTGCTGACTGATG
R:
ATCTCCTCTGGATGGCTGCTC
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]