RnoEX6007893 @ rn6
Exon Skipping
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277727201-277730389:+
Coord C1 exon
chr1:277727201-277727752
Coord A exon
chr1:277728045-277728170
Coord C2 exon
chr1:277728972-277730389
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGGCACATGCTCCTTTGCAGAAG
3' ss Score
4.78
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
AGTGGGAGGTGAGAACTTTGCTCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGCTTTGATGTGAATCCTGACGTGACACAGGTTGGCCTGGTGGTATACGGTAACCAGGTGCAGACCGCTTTCGGACTTGACACCCATCCCACCCGTGCTTCTGTGCTGCGGGCCATGAGCCAGGCCCCCTACCTAGGGGGTGTGGGCTCTGCTGGCACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGAGCCCGCCCCGGTGTCCCCAAGGCTGTGGTGATGCTCACAGGTGGCAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGACAATGGCATCTCAGTCTTGGTAATGAGTGTGGGAGCTGTCCTCAAGGAGGCAGTGAGGAGGCTTGCTGGTCCACGGGACTACCTGATCCATGTGGCAGCTTACACAGACCTGCGGTACCATCAGGACACGCTCATCGAGTGGCTATGCAGAG
Seq A exon
AAGCCAAGCGGCCAGTCAGCCTCTGCAAACCTAGCCCATGCATGAATGAAGGCACCTGTATCCTGAAGAACGGCAGTTACCGATGCGAGTGCTGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC
Seq C2 exon
GCGTCTTGAGAGGAGATGCCCCCATGGCACACAGCTTCCGCCGAGAGCCTACAGGAAGACAACAGCCAACCCCCTCCCAGCAAGCTCCCAAGCATGTTGGAGTCTGAAAGGCCCTATCGTCAGCCAAGTAAATCTCCTGGGGGCCCTGGAGCATCTGCTTCTAGCTCTAAGAGCCGTTTTGCCCATAAGCCTCTGCCACAGGGGACACTGCTTAGGACAGTAGCAGCTGTCACTCACTGTGGTGATGATGGAAAGGCCTGATGTGTCAGTATTTACCTCCTGTATCTGTTTGTACCTTGTTAAGGTAAGCTGCCTTGTCACTTTTCCTGAGGATAAGGGGCAGGCTGGAGAGATCTGAAGACCCGTATGAGGGTCATCACAGATTAACTAGACAGATGTTGAAAAAGGTTTCTGTCAGAGCTCACCACCTGGTGATTGGTGCAAAAGGTGGGCTTCTCCATTTTCCAAAAGACAGCTCCTATGGATCTAGTTTGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.771
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=93.5)
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACACAGACCTGCGGTAC
R:
AGAGGCTTATGGGCAAAACGG
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]