MmuEX6033837 @ mm9
Exon Skipping
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56983322-56986568:+
Coord C1 exon
chr19:56983322-56983873
Coord A exon
chr19:56984180-56984305
Coord C2 exon
chr19:56985105-56986568
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGGCACATTCTCCTTTGTAGAAG
3' ss Score
5.12
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
TGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCATCGAGTGGCTATGTAGAG
Seq A exon
AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC
Seq C2 exon
GCATCTTGAGAGGAGATGCCCCCATGGCACGTAGCTTCCACCAAGAGCCTGCAGGACTACAAGGGCCAACCCCCTCGCAGCAAGCTCCCAAGCATCTTAGAATCGGAAAGGCCCTGTCCTCCGCCAAGTAAATCTCCCGGGGGCCCTGGAGCATCAGCTTCCAGCTCTGCCACAGGGGACACTGCTTGGGACAGTAGCAGCTGTCGCTATGGTGATGTTGGGAACGACTACTGCGTCAGCATTTATCCCCTGAATCCGTTTGTACCTTGCTGAGGTAAGCTGCCTGTCATTTTTCCTGAGGATAAGAGGCAGGCCAGAGAGATCTGACGACCTGCTTGAGGGTCATCACAGATGCTAGACAGATGTTCCTGAGGTGGTAGCGCTTTGAAGAAGACTCTGTCAGAGCTCACCGCCTGGTGATTGGTGCAAAAAGTGGGTTTCTCCCTGTTCCAAAAGACAGCTCCTGTGGATTTCATTTGCAAAGGGATTATGTGTCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.605
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=93.5)
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTTACACAGACCTTCC
R:
GCTACTGTCCCAAGCAGTGTC
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: