BtaEX6101336 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018941 | CPXM2
Description
Bos taurus carboxypeptidase X (M14 family), member 2 (CPXM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206057]
Coordinates
chr26:43829293-43837453:-
Coord C1 exon
chr26:43837314-43837453
Coord A exon
chr26:43835350-43835449
Coord C2 exon
chr26:43829293-43829890
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCCTCATGTTCACCGAGTAGGTC
3' ss Score
3.87
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTCTCAACGATTTCAGCTACCTTCACACAAACTGCTTCGAGCTGTCCATCTACGTGGGCTGTGATAAATACCCACATGAGAGCGAGCTGCCTGAGGAGTGGGAGAACAATCGGGAATCCTTGATTGTGTTCATGGAGCAG
Seq A exon
GTCCATCGGGGCATCAAAGGCCTGGTGAGGGATTCGCATGGAAAAGGAATTCCAAATGCTGTTATCTCCGTGGAAGGCGTTAACCATGACATCCGAACAG
Seq C2 exon
CCAGCGACGGGGATTACTGGCGCCTCCTCAACCCTGGAGAGTATGTGGTCACAGCCAAGGCAGAAGGTTTCACCTCGTCCACTAAGAACTGCATGGTTGGCTATGACATGGGGGCCACGCAGTGCGACTTCACGCTCAGCAAAACCAACCTGGCCAGGATCAGAGAGATCATGGAGAAGTTCAGAAAGCAGCCCGTCAGCCTGCCAGCCAGGCGGTTGAAGCTGCAGGGGCGGAAGAGACGACAGCGCGGGTGACCTCCCAACTCTTGAGTCGTGCCCTGGACCCCTGCAAATTAAACCGCCTTGGTTGTAGCTCCATAGAGGACTCACTCCTTGTTGTTTTCTCTGTAATTCATGAAGGCCTGGGAGTATGTGTGCACTGCAAGGCCGGTCCCCAGCAGGGGACTTAGGATAGTTTCTTTGTTCCCATTTATCCAAATAACTTGGGCAAAGCAGCAGAGGAAGGCTGGTAGAGGTGAAATAATTCAACAAGCCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018941-'15-19,'15-15,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.088 C2=0.196
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PD(12.6=83.0)
A:
PF136201=CarboxypepD_reg=PU(39.0=88.2)
C2:
PF136201=CarboxypepD_reg=PD(59.7=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTACGTGGGCTGTGAT
R:
TGGTTTTGCTGAGCGTGAAGT
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]