RnoEX0024341 @ rn6
Exon Skipping
Gene
ENSRNOG00000015902 | Cpxm2
Description
carboxypeptidase X (M14 family), member 2 [Source:RGD Symbol;Acc:1310955]
Coordinates
chr1:204048785-204055093:-
Coord C1 exon
chr1:204054954-204055093
Coord A exon
chr1:204053727-204053826
Coord C2 exon
chr1:204048785-204050111
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGGTCTCATGTGTGCTGCAGGTT
3' ss Score
7.29
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTCTAAATGACTTCAGTTACCTCCATACGAACTGCTTTGAGCTGTCCATCTACGTGGGCTGCGATAAATACCCACACGAGAGTGAGCTGCCCGAGGAATGGGAGAATAACCGGGAGTCTCTGATTGTGTTCATGGAACAG
Seq A exon
GTTCATCGAGGCATCAAAGGCATAGTGAGAGACTTACAAGGGAAAGGGATTTCTAATGCCATCATCTCTGTGGAAGGTGTTAACCATGACATCCGGACAG
Seq C2 exon
CCAGCGATGGGGATTATTGGCGCCTACTGAACCCTGGTGAATACGTGGTCACAGCGAAAGCAGAAGGCTTTATCACCTCCACCAAGAACTGCATGGTTGGCTATGACATGGGAGCAACTCGGTGTGACTTCACACTCAGCAAGACCAACCTGGCTAGGATAAGAGAAATCATGGAGACATTTGGGAAGCAGCCTGTCAACCTACCTGCCAGGCGCCTGAAGCTGCGGGGACGAAAAAGGCGGCAGCGCGGGTGACTCTCTTGGACACTTGAGACATACCCCAGACTGTGCAAATAAAATCCACTCCAGTAGTAACTCTGTAGCAGGCTCTCCCTGTTGTTTTGACTGTAATTCAAGAGACACCCAGGAGCATGCCCGCATAGCTTGGCTGGCCCCAAAGGGGAGGGCTGGCGGCTCAGGGTGTTTTCTTTCCTTTGTTCTCATTTATCCAAATACCTTGGACAGAGCAGCAGAGAAAGGCTGGTGGCAGTGAGGGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015902_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PD(12.6=83.0)
A:
PF136201=CarboxypepD_reg=PU(39.0=88.2)
C2:
PF136201=CarboxypepD_reg=PD(59.7=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGGCTGCGATAAATACC
R:
CTAGCCAGGTTGGTCTTGCTG
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]