MmuEX0012635 @ mm9
Exon Skipping
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:139234499-139240811:-
Coord C1 exon
chr7:139240672-139240811
Coord A exon
chr7:139239398-139239497
Coord C2 exon
chr7:139234499-139235829
Length
100 bp
Sequences
Splice sites
3' ss Seq
AGGTCTCATGTTTGCTGCAGGTT
3' ss Score
7.58
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTCTAAACGATTTCAGCTACCTCCATACAAACTGCTTTGAGCTGTCCATCTACGTGGGCTGTGATAAATACCCACACGAGAGCGAGCTGCCGGAGGAATGGGAGAATAACCGGGAGTCTCTGATTGTGTTCATGGAGCAG
Seq A exon
GTTCATCGAGGCATCAAAGGCATAGTGAGAGATTTACAAGGGAAAGGGATTTCAAATGCTGTCATCTCTGTGGAAGGTGTTAACCATGACATCCGGACAG
Seq C2 exon
CCAGCGATGGGGATTACTGGCGTCTACTGAACCCTGGCGAATATGTGGTCACAGCCAAGGCGGAAGGCTTTATCACTTCCACCAAGAACTGCATGGTTGGCTATGATATGGGAGCTACTCGGTGTGACTTCACCCTCACAAAGACCAACCTGGCTAGGATAAGAGAAATTATGGAGACATTTGGGAAGCAGCCTGTCAGCCTACCCTCCAGGCGCCTGAAGCTGCGGGGACGGAAAAGGCGGCAGCGTGGGTGACCCTGTCGGACACTTGAGACATACCCCAGACCGTGCAAATAAAAATCCACTCCAGTAGTAACTCTGTAGCAGGCTTTCCCTGTTGTTTTGACTGTAATTCAAGAGACACTCAGGAGCATACCTGCATGGCTTGGCTGACCCCAAAGGGGAGGGCTGGTGGCTCAGGGTGTTTTGTTTTTTGTTTTTTGTTTTTTCCTTTGTTCTCATTTATCCAAATACCTTGAACAGAGCAGCAGAGAAAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PD(12.6=83.0)
A:
PF136201=CarboxypepD_reg=PU(39.0=88.2)
C2:
PF136201=CarboxypepD_reg=PD(59.7=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTACGTGGGCTGTGAT
R:
CCAGGTTGGTCTTTGTGAGGG
Band lengths:
249-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: