GgaEX1017498 @ galGal4
Exon Skipping
Gene
ENSGALG00000009693 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr6:31278697-31286335:-
Coord C1 exon
chr6:31286196-31286335
Coord A exon
chr6:31285843-31285942
Coord C2 exon
chr6:31278697-31280345
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCGCTTGTCCTCCCAACAGGTC
3' ss Score
11.65
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCATAAATGACTTCAGCTATCTGCACACCAACTGCTTTGAGCTGTCCATCTATGTGGGCTGCGACAAGTATCCCCACGAGAGCGAGTTGCCTGAGGAGTGGGAGAACAACCGGGAGTCCCTCATCGTTTTCATGGAGCAG
Seq A exon
GTCCATCGGGGCATCAAGGGCATAGTGAAAGACACACATGGAAGGGGAATCCCAAATGCCATTATTTCAGTAGAAGGCGTTAACCATGACATTCGCACAG
Seq C2 exon
GAGCTGATGGGGACTACTGGCGCCTTCTCAACCCGGGGGAATACCTGGTCAGTGTAAAAGCAGAAGGCTACACCACCGCCACCAAGAACTGCGAGGTGGGCTACGACATGGGAGCTACCCTTTGCGACTTCACCATCTCCAAGACCAACCTGGCGAGGATCAAGGAAATCATGAGGAAATTCGGGAAGCAGCCGATCAGCCTGTCCCTGCGGAGGCTCCGGCAGCGGGCTCGGCAGTGGAGGCAGCGCAGATAGAGCCCGGCTCCGCCAACATCAGCCCAGCTGTAGCAGTAGTGAGAGTCGCATAGCCCAACCCTTCGTACGCATTTCCCTGTCTGAGGCCTTTCTCTTAGTGGAGCTGGATGTGGGTTTGTCAGTGTGGCAAAAAACTGGAAGCAAGGATTGGTTCGAGCTGAAGTGAAATAAGCCCCGGTGTGTGGGGAGGAGAGGTGGGAAGAATGAAAAGGTGTTTTGAGTTGAAATGAAATGTTTTGGGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693-'18-21,'18-19,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.074 C2=0.029
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PD(12.6=83.0)
A:
PF136201=CarboxypepD_reg=PU(39.0=88.2)
C2:
PF136201=CarboxypepD_reg=PD(59.7=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCTGCACACCAACTGCT
R:
GAAGTCGCAAAGGGTAGCTCC
Band lengths:
256-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]