HsaEX6090964 @ hg38
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X, M14 family member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr10:123713448-123757352:-
Coord C1 exon
chr10:123757213-123757352
Coord A exon
chr10:123754663-123754762
Coord C2 exon
chr10:123713448-123713557
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTCTCATGTTTGCTGAGCAGGTT
3' ss Score
5.59
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTCTGAACGATTTCAGCTACCTTCATACAAACTGCTTCGAACTGTCCATCTACGTGGGCTGTGATAAATACCCACATGAGAGCCAGCTGCCCGAGGAGTGGGAGAATAACCGGGAATCTCTGATCGTGTTCATGGAGCAG
Seq A exon
GTTCATCGTGGCATTAAAGGCTTGGTGAGAGATTCACATGGAAAAGGAATCCCAAACGCCATTATCTCCGTAGAAGGCATTAACCATGACATCCGAACAG
Seq C2 exon
GCAGAGTTTCCCTGCAGAAGCTTTCTCTTGCCTGCCGCCGTGTGAGATGTGCTTTTGCTCTTTCTTCATCTTCCACCATGATTGTGAGGCCTCCCCAGCCATATGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898-'30-46,'30-37,31-46=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.020 C2=0.189
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PD(12.6=83.0)
A:
PF136201=CarboxypepD_reg=PU(39.0=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGATTTCAGCTACCTTCA
R:
AGTTCCATATGGCTGGGGAGG
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains