BtaEX6101511 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018365 | CYP2E1
Description
Bos taurus cytochrome P450, family 2, subfamily E, polypeptide 1 (CYP2E1), mRNA. [Source:RefSeq mRNA;Acc:NM_174530]
Coordinates
chr26:50555650-50556867:-
Coord C1 exon
chr26:50556718-50556867
Coord A exon
chr26:50556280-50556440
Coord C2 exon
chr26:50555650-50555826
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCAACCCCCCTGTTTTCCAGGCC
3' ss Score
8.6
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GGATCATTTTCAACAATGGATCAACCTGGCGGGACACCCGACGGTTCTCGTTGACCACCCTCCGTGACTTAGGGATGGGAAAACAGGGCAATGAGCAGCGGATCCAGAGGGAGGCCCACTTCCTGCTGGAGGTGCTCAGGAAGACCCAGG
Seq A exon
GCCAGCCCTTTGACCCCACGTTTGTCGTCGGCTTTGCACCTTACAATGTCATCTCTGACATCCTCTTCCACAAACGCTTTGACTATAAAGATCAGACGAGCCTGAGGCTGATGAGTCTGTTCAACGAGAACTTCTACCTGCTCAGCAGCCCCTGGATCCAG
Seq C2 exon
CTTTATAATAATTTCTCAGACTACCTACAGTACCTGCCTGGAAGCCATAGAAAGCTACTGAAAAATGTGTCTGAAGTAAAAAGTTATGCTTTAGAAAGAGTGAAGGATCACCAGAAGTCCCTGGAACCCAGCTGCCCCCGAGGCTTCTTGGACACCATGCTGATAGAAATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018365-'4-7,'4-4,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCCGTGACTTAGGGATG
R:
TCAGCATGGTGTCCAAGAAGC
Band lengths:
257-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]