RnoEX0025897 @ rn6
Exon Skipping
Gene
ENSRNOG00000012458 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:RGD Symbol;Acc:2475]
Coordinates
chr1:213516363-213517481:+
Coord C1 exon
chr1:213516363-213516512
Coord A exon
chr1:213516818-213516978
Coord C2 exon
chr1:213517305-213517481
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACACTCTACCTATTTTCCAGGCC
3' ss Score
8.49
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GGATTATTTTCAATAATGGGCCCACATGGAAGGATGTGCGGAGGTTTTCCCTAAGCATTCTCCGAGACTGGGGAATGGGGAAACAGGGTAATGAGGCCCGCATCCAAAGGGAGGCGCAATTCCTGGTGGAGGAGCTCAAAAAGACCAAAG
Seq A exon
GCCAGCCTTTTGACCCCACATTTCTGATTGGCTGCGCACCCTGCAATGTCATTGCGGATATCCTCTTCAACAAACGTTTCGACTACAATGACAAGAAGTGTCTGAGGCTCATGAGTTTGTTCAATGAAAACTTCTACCTGCTGAGCACCCCCTGGATCCAG
Seq C2 exon
CTTTACAATAACTTTGCGGATTATCTACGATACCTACCTGGAAGCCATAGAAAAATCATGAAAAATGTGTCTGAAATAAAACAGTACACACTTGAAAAAGCCAAGGAACACCTTCAGTCACTGGACATCAACTGCGCCCGGGATGTGACTGACTGTCTCCTCATAGAGATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012458-'3-10,'3-9,4-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGTGCGGAGGTTTTCC
R:
CGCAGTTGATGTCCAGTGACT
Band lengths:
257-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]