BtaEX6102462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36933306-36955027:+
Coord C1 exon
chr29:36933306-36933386
Coord A exon
chr29:36954569-36954728
Coord C2 exon
chr29:36954900-36955027
Length
160 bp
Sequences
Splice sites
3' ss Seq
GCACTGGCTTCTCTGTGCAGAAT
3' ss Score
8.39
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGAAGAGCGAGCGGGCGCGCAGGGGCGCAGGCGGCTCCGGTGACCTCGGCGCTGGATTCAAGTACACCTCGCGGCCGGAG
Seq A exon
AATATGAATGGCTGTGAGGAAGGCGTGGAGTTCTTGCCGGCCAACAATAGCAGTAAGGTGGAGAAGGGCGGCCCGCGGCGGTGGGTGGTGCTGATGGCCGTGCTGGCCGCCTTCCTGGCGCTGTCCCTCCTGGCAGGGCTCCTGGCGTGGCACTTCCAGG
Seq C2 exon
ACCGGAATGTGCGAGTCCAGAAGATCTTCAACGGCTACCTGAGTGTCCGGAACGAGAACTTCCTGGATGCCTACGAGAACTCCAACTCCACTGAGTTTGCAAACCTGGCCAAGAAGGTGAAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712-'0-3,'0-2,5-3=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139015=SEA=PU(41.8=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGAGCGAGCGGGCG
R:
CTCCTTCACCTTCTTGGCCAG
Band lengths:
206-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]