MmuEX0045084 @ mm9
Exon Skipping
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:30915740-30939438:-
Coord C1 exon
chr9:30939131-30939438
Coord A exon
chr9:30916156-30916315
Coord C2 exon
chr9:30915740-30915867
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGGAACTTTTTTGTGTTTAGAAC
3' ss Score
7.18
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGGGCGGGGCGACCCTGGAGGCCACACCCTGAAACTACCTGAGCTGGGAGGAAGGATGAGAACTGGAGCCTCCGCCGCGGGCCGGGCGCGCTGGGCCTGCCCCGGAACTTGGCCCGTGCCTCACCTCGTCCCCCTCGTCCCTCGTGTCCCCAACACCCCGCGGGCCATGGTAGACGGCTGCCCGGAGGGACCACGCGTCTGAGACCGGCGATCGGACCGCCAAAACCATGGGTAGCAATCGGGGCCGCAAGGCCGGAGGGGGCTCTCAGGACTTCGGCGCGGGACTCAAGTACAACTCCCGGCTAGAG
Seq A exon
AACATGAATGGCTTTGAGGAGGGTGTGGAGTTCCTGCCTGCGAACAATGCCAAGAAAGTGGAGAAGCGAGGCCCCAGGCGCTGGGTGGTGCTGGTGGCAGTGCTGTTCAGCTTCCTCTTGCTCTCCCTCATGGCTGGCTTGCTGGTGTGGCACTTCCATT
Seq C2 exon
ATCGGAATGTGCGGGTTCAAAAAGTCTTCAATGGCCATCTGAGGATCACAAATGAGATCTTTCTGGATGCGTATGAGAACTCCACCTCCACAGAGTTTATCAGCCTGGCCAGCCAGGTGAAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-'0-4,'0-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139015=SEA=PU(35.2=88.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGTAGACGGCTGC
R:
GCTGGCCAGGCTGATAAACTC
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: