DreEX0075495 @ danRer10
Exon Skipping
Gene
ENSDARG00000061173 | st14a
Description
suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
Coordinates
chr18:44539429-44548062:+
Coord C1 exon
chr18:44539429-44539532
Coord A exon
chr18:44546215-44546374
Coord C2 exon
chr18:44547932-44548062
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTCCTCTGTAGGAC
3' ss Score
12.98
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AAGTGGAAGTGTGAGGAGAAAGGTGTGTTGATTTTGATTCTGCCAGTGGTCTCTCAAAAATGGACCCTATGGATGGAGGAATGCGTTACACTCCTGGTTCTACG
Seq A exon
GACAAGGACTGGGACCAAGCTGTCACATTTTTGCCTGCATCAGATCATAAAAAGATGGAGAAGAAAAAGGGCCCTGGGAAAATTGGGATCATTGTTGGTCTGGTGATCCTGGCAGCTGTTTTGGCTTTGATCATAGGGCTTGTGGTCTGGCATTTCCATT
Seq C2 exon
TCCGGAATGATTTGAAGTTGCAGAAGATTTACACCGGCTCATTTAGGATAACAAATGAAGCTTTTGTGGATGCTTATGAAAACCCGCAAAGTCCAGAGTTTCAGAACTTGGCAGATAAAGTCAGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061173-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(2.7=54.5)
A:
PF0248011=Herpes_gE=FE(77.9=100),PF0055814=Vpu=PU(75.0=50.0)
C2:
PF0248011=Herpes_gE=PD(10.3=77.8),PF0055814=Vpu=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAGTGTGAGGAGAAAGGT
R:
CTGAGTACTGACTTTATCTGCCA
Band lengths:
234-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]