RnoEX0086367 @ rn6
Exon Skipping
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32254954-32280869:-
Coord C1 exon
chr8:32280607-32280869
Coord A exon
chr8:32255394-32255553
Coord C2 exon
chr8:32254954-32255081
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGGAACCTTTTTGCGTTTAGAAC
3' ss Score
6.21
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGGAGGAAGGATGAGATCGGGAGCCTCCGCCGCCGGCCGGGCGCGCTGGGCCTGCCCCGGAACTTGGCTCGTGCCTCCCCTCACACCCTTCGTTCCTCGTGTCCCCAGCACCCCGCGGGTCATGGTAGTCGGTTGCCGGCAGAGACCACGCGTCTGAGACCGGCGATCGGGCCGCCGAGACCATGGGGAACAATCGGGGCCGCAAGGCCGGAGGGGGCTCGCAGGACTTCGGCGCCGGACTCAAGTACAACTCCCGGCTAGAG
Seq A exon
AACATGAATGGCTTTGAGGAGGGTGTGGAGTTCCTGCCTGTGAACAACGCCAAGCAGGTGGAGAAGCGAGGCCCCAGGCGCTGGGTGGTGATGGTGGCCGTAGTGTTCAGCTTCCTTTTGCTCTCGCTCATGGCCGGCTTGCTGGTGTGGCACTTCCATT
Seq C2 exon
ACCGGAATGTGAGGATCCAAAAGGTCTTCAATGGCCATCTGAGGATCACGAATGAGAACTTTCTGGACGCGTATGAGAACTCCACCTCCACGGAGTTCATCAGCCTGGCCAGTCAGGTGAAGGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903-'0-1,'0-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139015=SEA=PU(35.2=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATGGTAGTCGGTTGCC
R:
GATGAACTCCGTGGAGGTGGA
Band lengths:
247-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]