HsaEX6005612 @ hg19
Exon Skipping
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:11344]
Coordinates
chr11:130029682-130058552:+
Coord C1 exon
chr11:130029682-130029955
Coord A exon
chr11:130058009-130058168
Coord C2 exon
chr11:130058425-130058552
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGGCGCCTCTCTCCCTGCAGAAA
3' ss Score
12.7
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
AGCGGAGCTGCAGCCGGAGAAAGAGGAAGAGGGAGAGAGAGCGCGCCAGGGCGAGGGCACCGCCGCCGGTCGGGCGCGCTGGGCCTGCCCGGAATCCCGCCGCCTGCGCCCCGCGCCCCGCGCCCTGCGGGCCATGGGAGCCGGCCGCCGGCAGGGACGACGCCTGTGAGACCCGCGAGCGGCCTCGGGGACCATGGGGAGCGATCGGGCCCGCAAGGGCGGAGGGGGCCCGAAGGACTTCGGCGCGGGACTCAAGTACAACTCCCGGCACGAG
Seq A exon
AAAGTGAATGGCTTGGAGGAAGGCGTGGAGTTCCTGCCAGTCAACAACGTCAAGAAGGTGGAAAAGCATGGCCCGGGGCGCTGGGTGGTGCTGGCAGCCGTGCTGATCGGCCTCCTCTTGGTCTTGCTGGGGATCGGCTTCCTGGTGTGGCATTTGCAGT
Seq C2 exon
ACCGGGACGTGCGTGTCCAGAAGGTCTTCAATGGCTACATGAGGATCACAAATGAGAATTTTGTGGATGCCTACGAGAACTCCAACTCCACTGAGTTTGTAAGCCTGGCCAGCAAGGTGAAGGACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139015=SEA=PU(34.9=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGACGCCTGTGAGA
R:
CTTCACCTTGCTGGCCAGG
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)