BtaEX6102534 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37892577-37926183:+
Coord C1 exon
chr29:37892577-37892725
Coord A exon
chr29:37924807-37924875
Coord C2 exon
chr29:37925833-37926183
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGTTGCTGGTTAATTTCAGGTC
3' ss Score
8.57
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCAGCTGAGAGGGGCCCTCAGCGGCCTGTCCACCTCCTGGCCCTGGGATGGTGCTTCCCACCGCCGGGCACGCATAGCAGTCAGAGATGGCGGCAGACATGGCGCTCTTCTTCGTGGTTGCTGGATTGCTGACGGCAGCTCTCTCAG
Seq A exon
GTCACCCATCTCCGACTCCATCTGACCAGCCCAGCACCACCAGTGCAGAGAGCCAGACCTTGGAGCCAG
Seq C2 exon
GGGAGCGACTCCAGGTCCGTCTGGTGAATGGGAGCACCCGCTGCGAAGGGACAGTGGAGGTCTGGTTCCAGCAGTCGTGGCAGCCCGTGTGCGGGGCGCTCTGGGAGCTCGATGCCTCCCACGCCCTGTGCAGCTCGCTGGACTGTGGCCGGGCTCACCCGCTGGAACTGCCGGTCCTGCAGACCCCGGAGCCGCCGGCCTGGGCAGCCGCGGGGAACGCCAGCTGGGCCCCGAACACCACAAGTGTCCTGGCCCCTGCCGTCCAGTGCAGCGGCCCCGAATGGCTGAGCTGCAAGGTGGTGGAGCGCGACTGCCGTAGCGACGAGTGGCCTGCCCAGGTCAACTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=1.000 C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=92.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACATGGCGCTCTTCTTCG
R:
GAGGCATCGAGCTCCCAGAG
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]