HsaEX0013894 @ hg38
Exon Skipping
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr11:60971680-61007910:+
Coord C1 exon
chr11:60971680-60971914
Coord A exon
chr11:61006574-61006642
Coord C2 exon
chr11:61007560-61007910
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCTGGTTCATTTCAGGTC
3' ss Score
9.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTCACAGGTTGGGTTTGATCGCATGCGTGTCGGAGAGGAGAGAGCAGAGAGAGACACAGGAACAAGAACAGCAAAGGGTAGAGCAGACCTGCGCCAGGGGCGCACAACGGCCGTGTCCACCTCCCGGCCCCAAGATGGTGCTTCCCACAGGCAGCCACGCGTAGCAGCCAGAGACAGCTCCAGACATGTGGCTCTTCTTCGGGATCACTGGATTGCTGACGGCAGCCCTCTCAG
Seq A exon
GTCATCCATCTCCAGCCCCACCTGACCAGCTCAACACCAGCAGTGCAGAGAGTGAGCTCTGGGAGCCAG
Seq C2 exon
GGGAGCGGCTTCCGGTCCGTCTGACAAACGGGAGCAGCAGCTGCAGCGGGACGGTGGAGGTGCGGCTCGAGGCGTCCTGGGAGCCCGCGTGCGGGGCGCTCTGGGACAGCCGCGCCGCCGAGGCCGTGTGCCGAGCACTGGGCTGCGGCGGGGCGGAGGCCGCCTCTCAGCTCGCCCCGCCGACCCCTGAGCTGCCGCCCCCGCCTGCAGCCGGGAACACCAGCGTAGCAGCTAATGCCACTCTGGCCGGGGCGCCCGCCCTCCTGTGCAGCGGCGCCGAGTGGCGGCTCTGCGAGGTGGTGGAGCACGCGTGCCGCAGCGACGGGAGGCGGGCCCGTGTCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725_MULTIEX2-3/13=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.958 C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=92.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACGGCCGTGTCCAC
R:
CTGCTCCCGTTTGTCAGACG
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development