HsaEX0013894 @ hg19
Exon Skipping
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:1691]
Coordinates
chr11:60739115-60775382:+
Coord C1 exon
chr11:60739115-60739386
Coord A exon
chr11:60774046-60774114
Coord C2 exon
chr11:60775032-60775382
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCTGGTTCATTTCAGGTC
3' ss Score
9.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGACCAAAACCACAAGCAGAACAAGCAGGCGTGAGACACTCACAGGTTGGGTTTGATCGCATGCGTGTCGGAGAGGAGAGAGCAGAGAGAGACACAGGAACAAGAACAGCAAAGGGTAGAGCAGACCTGCGCCAGGGGCGCACAACGGCCGTGTCCACCTCCCGGCCCCAAGATGGTGCTTCCCACAGGCAGCCACGCGTAGCAGCCAGAGACAGCTCCAGACATGTGGCTCTTCTTCGGGATCACTGGATTGCTGACGGCAGCCCTCTCAG
Seq A exon
GTCATCCATCTCCAGCCCCACCTGACCAGCTCAACACCAGCAGTGCAGAGAGTGAGCTCTGGGAGCCAG
Seq C2 exon
GGGAGCGGCTTCCGGTCCGTCTGACAAACGGGAGCAGCAGCTGCAGCGGGACGGTGGAGGTGCGGCTCGAGGCGTCCTGGGAGCCCGCGTGCGGGGCGCTCTGGGACAGCCGCGCCGCCGAGGCCGTGTGCCGAGCACTGGGCTGCGGCGGGGCGGAGGCCGCCTCTCAGCTCGCCCCGCCGACCCCTGAGCTGCCGCCCCCGCCTGCAGCCGGGAACACCAGCGTAGCAGCTAATGCCACTCTGGCCGGGGCGCCCGCCCTCCTGTGCAGCGGCGCCGAGTGGCGGCTCTGCGAGGTGGTGGAGCACGCGTGCCGCAGCGACGGGAGGCGGGCCCGTGTCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.958 C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=92.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACGGCCGTGTCCAC
R:
CTGCTCCCGTTTGTCAGACG
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)