MmuEX6031551 @ mm10
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10799194-10830058:-
Coord C1 exon
chr19:10829808-10830058
Coord A exon
chr19:10800344-10800412
Coord C2 exon
chr19:10799194-10799541
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGCCGCTGGTTCATTTCAGGTC
3' ss Score
9.67
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
CACAAGCAGAAGGTAGAGGCGTGAGACACTCACAGGCTGGGCCTGTGTGTAGGAGAGAGAGTGCGCAGCACACAGGGCACTGAGAACAAGAACAGAAAGGGCACCACGGGTGAGACAAGCCATCGGTGGCACAACCGTCTCCCGGAACCAGGATGGCACTTCCTATGGGCAGGCGTGAGTAGCAGTGGAGACAGCACCAGACATGTGGCTCTTCCTTGGGATCGCTGGATTGCTGACAGCAGTTCTCTCAG
Seq A exon
GTCTCCCATCTCCAGCCCCCTCTGGCCAGCACAAAAATGGCACCATCCCGAACATGACCTTGGACCTAG
Seq C2 exon
AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670-'0-7,'0-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTTGGGATCGCTGGAT
R:
CTTTGCACACAGCCTCCGTAG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types