DreEX6001435 @ danRer10
Exon Skipping
Gene
ENSDARG00000096187 | si:dkey-21h14.10
Description
si:dkey-21h14.10 [Source:ZFIN;Acc:ZDB-GENE-110913-2]
Coordinates
chr4:11121130-11123789:-
Coord C1 exon
chr4:11123467-11123789
Coord A exon
chr4:11122523-11122738
Coord C2 exon
chr4:11121130-11121438
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTTATAATCTAATAACACAGGAA
3' ss Score
4.55
5' ss Seq
AGTGTATAA
5' ss Score
-8
Exon sequences
Seq C1 exon
TCTGATTTGTCACTGCTTGTGTTTGGTTGGTGAATGGCAATAATCCCTGTGCTGGTTGAGTGGAGGTTCTTCGAAATGGGCAGTGGAGACAGTGTGTAAACAACATTGGGATGTTGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAATGGCTGTAAAACCAACATATAATGCTCACTTTGGACAAGAATCAGGATCAATTTTAATGGCTTTTATACAGTTCAGTGGATCAGAGACTTTACTCAAAGACTATAGTTCAGACAGTCATTTAACAAATTACTGTAATCATGCTGAAAATGCTGGTGTGGTCTGTTCAG
Seq A exon
GAAAAGGACTTCGACTTGTGAATGGGTTTCACCTGTGCTATAGGAGAGTGGAGATGCTCCGTGCAGAAGAATGGGGTTCAGTGTGTGACGCTGCCTTTGACCAGCAGGATGCAGAGGTAGTGTGCAGACAGTTGGGCTGTGGAACTCCTGTACAGTTGCTAAGAGCTGCTGCTTTTGGCAAAGGGAAAAATCATGTTTGGTCAGAGGAGATTCAGT
Seq C2 exon
CAAACGTGAGGCTGGTTGGTGGTTATGATGCCTGTGCTGGAAGATTAGAGGTTTATTATAATGGAGAATGGGGAACCGTGTGTGATGATTATTGGAGTTTGACAAACACTGCAGTGGTGTGCAGAGAACTGAACTGCAGCGATTCTTCAGATACAATGCGTGCTGCTCACTTTGGATCTGGATCAGGAAAGATTTGGATGGACGATGTGGTCTGCAGTGGATCAGAGCCCTCAATACTCAACTGCAGTAGCGATAAAATGGGTACCCACAACTGTGAGCATAATGAAATGGTTGGAATTATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096187-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=98.2)
A:
PF0053013=SRCR=PU(94.3=90.4)
C2:
PF0053013=SRCR=PD(4.3=2.9),PF0053013=SRCR=WD(100=94.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTCTTCGAAATGGGCA
R:
GCACAGGCATCATAACCACCA
Band lengths:
299-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]