BtaEX6102544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008064 | VPS37C
Description
vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr29:38036439-38040833:-
Coord C1 exon
chr29:38040736-38040833
Coord A exon
chr29:38037233-38037404
Coord C2 exon
chr29:38036439-38036521
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGAGGTGTCTTGTCCTGTAGGTC
3' ss Score
9.2
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
GAAAGATGGAAACGCTGAAAGACAAGACCCTGGAGGAGCTGGAGGAGATGCAGAACGACCCGGAGGCCATCGACCGACTGGCCCAGGACTCCCCGGAG
Seq A exon
GTCCAGGATCTGCAGCTGGAGCGGGAGATGGCGCTGGCCACCAACCGCAGCCTGGCCGAACGGAACCTGGAGTTCCAGGGTCCACTGGAGATCAGCCGCTCAAACCTCTCAGACAAGTACCAGGAGCTCCGGAAGCTGGTGGAGCGGTACCAGGAGCAGAAGGCGAAGCTGG
Seq C2 exon
AGAAGTTCTCCTCAGCACTGCAGCTAGGGACCTTGTTGGACCTTCTGCAGATTGAAAGCATGAAGATTGAAGAAGAGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008064-'5-3,'5-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.155 C2=0.286
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=87.1)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGAAACGCTGAAAGACA
R:
TCGGACTCTTCTTCAATCTTCATGC
Band lengths:
178-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]