MmuEX0051532 @ mm10
Exon Skipping
Gene
ENSMUSG00000048832 | Vps37c
Description
vacuolar protein sorting 37C [Source:MGI Symbol;Acc:MGI:2147661]
Coordinates
chr19:10706210-10711353:+
Coord C1 exon
chr19:10706210-10706308
Coord A exon
chr19:10710270-10710441
Coord C2 exon
chr19:10711271-10711353
Length
172 bp
Sequences
Splice sites
3' ss Seq
AGTTGTCCTGCTTTCCTTAGGTT
3' ss Score
10.05
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
Exon sequences
Seq C1 exon
GAGAAGATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCCGGCTAGCCTTGGAGTCTCCTGAG
Seq A exon
GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG
Seq C2 exon
AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048832_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.774 A=0.138 C2=0.286
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=87.1)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGAGGGGCTGAAAGACA
R:
CTCAGACTCCTCCTCGATCTTCA
Band lengths:
178-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types