DreEX0084483 @ danRer10
Exon Skipping
Gene
ENSDARG00000031836 | vps37c
Description
vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061110-126]
Coordinates
chr1:44249359-44255415:+
Coord C1 exon
chr1:44249359-44249467
Coord A exon
chr1:44253894-44254065
Coord C2 exon
chr1:44255333-44255415
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGTCTATATTTTTCTTTCAGATC
3' ss Score
11.72
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGTCCTAGCAAATCAATGGAGAAGCTTCAAGACCTCAGCCAGTCCGAGTTGCAGGATTTGCTGGACAACTTGGAGCGGGTGGAGTCTATGGCACTGGAGTCTGATGAG
Seq A exon
ATCCAGAACATTCAGCTGGAGAGAGAGATGGCTCTGGCTGCAAACCGCAGTCTGGCTGAGCAGAACCTAGACATGAAGCCCCGTATTGAAAATGACAGAGCACGGCTGGTGGAGAAATACACTGAACTGGAGGCAGTGAGGGAGAAATACAAACAGCACTGTGTCCTGAGAG
Seq C2 exon
ACAGCATCATGGGACAGGTGTCTCCGGAGGGTCTGTTGTCTCGTCTGCAGGCAGAGGGCGCCAGCACAGAGGCAGAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031836-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.098 C2=0.429
Domain overlap (PFAM):
C1:
PF062166=RTBV_P46=PU(33.3=93.5),PF072008=Mod_r=PU(32.9=87.1),PF120613=DUF3542=PU(31.0=83.9)
A:
PF062166=RTBV_P46=PD(64.4=96.6),PF072008=Mod_r=PD(64.6=91.4),PF120613=DUF3542=PD(66.7=96.6)
C2:
PF062166=RTBV_P46=PD(0.1=0.0),PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGCAAATCAATGGAGAAGCT
R:
CTCTGACTCTGCCTCTGTGCT
Band lengths:
189-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]