HsaEX6002234 @ hg38
Exon Skipping
Gene
ENSG00000167987 | VPS37C
Description
VPS37C, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr11:61133255-61138835:-
Coord C1 exon
chr11:61138737-61138835
Coord A exon
chr11:61134036-61134207
Coord C2 exon
chr11:61133255-61133337
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTCCTGCCCTTTTAGGTC
3' ss Score
12.74
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
Exon sequences
Seq C1 exon
GGAAGGATGGAGACGCTGAAGGATAAGACCCTGCAGGAGCTGGAGGAGTTGCAGAATGACTCGGAGGCGATTGACCAGCTGGCCCTGGAGTCCCCTGAG
Seq A exon
GTCCAGGACCTACAGCTGGAACGGGAGATGGCACTGGCCACCAACCGGAGCCTGGCAGAGCGGAACTTGGAGTTCCAGGGTCCCCTGGAGATCAGCCGCTCAAACCTCTCGGATAGATACCAGGAGCTCCGGAAGCTCGTGGAGCGGTGCCAGGAGCAGAAGGCAAAGCTGG
Seq C2 exon
AGAAATTTTCTTCAGCACTGCAGCCAGGGACCTTGTTAGACCTTCTGCAGGTGGAAGGCATGAAGATCGAAGAAGAGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167987_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=0.112 C2=0.143
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=87.1)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGGAGACGCTGAAGGA
R:
TCGGACTCTTCTTCGATCTTCA
Band lengths:
179-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains