BtaEX6103276 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43681468-43683498:-
Coord C1 exon
chr29:43682899-43683498
Coord A exon
chr29:43681780-43681877
Coord C2 exon
chr29:43681468-43681552
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTCCCACCCTGGCTATGCAGGTT
3' ss Score
6.85
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCTCTTTGCCCTGGCAGAGCTGGAGAACGTGGAGGCAGCCAGCACCAAGATCCCCGAGTCTCGAGGCTGCCAGGCCCTGGCGGCCGGGCGCATCCTGCAGGCCCGCACCCCCGTGCTCTGTGTGGCGGTCAAGCGCCAGGTGCTCTGCTACCAGCTGGGCCCAGGTCCAGGGCCCTGGCAGCGCCGCATCCGTGAGCTGCAGGCACCAGCGCCCGTGCAGAGCCTGGGGCTCCTGGGCGATCGGCTGTGCGTGGGTGCGGCTGGCACCTTCGCCCTCTACCCACTGCTTAACGAGGCAGCGCCTTTAGCGCTAGGGGCCGGTCTTGTGCCTGAGGAGCTGCCCCCGTCCCGCGGGGGCCTGGGTGAGGCCCTGGGTGCCGTGGAGCTCAGCCTCAGTGAGTTCCTGCTGCTCTTCACCACCGCCGGGGTCTACGTGGACAGCGCCGGCCGCAAGTCTCGCATGCAAGAGCTGCTGTGGCCAGCAGTGCCCACGGGCTGGG
Seq A exon
GTTATGCGGCCCCCTACCTGACAGTGTTCAGCGAAAATGCCATCGATGTGTTTGATGTGAGGAGGGCAGAATGGGTCCAGACCGTGCCACTCAAGAAG
Seq C2 exon
GTGCGACCCCTGAACCCAGAGGGCTCCCTGTTCCTCTTTGGTACCGAGAAGGTCCGTCTGACCTACCTCAGGAACCCGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-'36-42,'36-41,38-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.9=100)
A:
PF0078017=CNH=FE(12.0=100)
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCTGCTGCTCTTCACC
R:
CCTGAGGTAGGTCAGACGGAC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]