MmuEX0010409 @ mm10
Exon Skipping
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6320243-6321911:+
Coord C1 exon
chr19:6320243-6320842
Coord A exon
chr19:6321657-6321754
Coord C2 exon
chr19:6321827-6321911
Length
98 bp
Sequences
Splice sites
3' ss Seq
AGGCTGTTTCCCACCTACAGGTT
3' ss Score
9.3
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG
Seq A exon
GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG
Seq C2 exon
GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-'49-57,'49-55,51-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.9=100)
A:
PF0078017=CNH=FE(12.0=100)
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGTGAGGCACTGGGTG
R:
AGGAACAAGGAGCCTTCTGGA
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types