BtaEX6103358 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010230 | CAPN1
Description
Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174259]
Coordinates
chr29:44086379-44087945:+
Coord C1 exon
chr29:44086379-44086436
Coord A exon
chr29:44087396-44087460
Coord C2 exon
chr29:44087877-44087945
Length
65 bp
Sequences
Splice sites
3' ss Seq
GAGACTGGTCTTTCTTGCAGACA
3' ss Score
7.68
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GACATGGAGATCAGCGTCAAGGAGCTGCGGACCATCCTCAACAGGATCATCAGCAAAC
Seq A exon
ACAAAGACCTGCGGACCACGGGCTTCAGCCTGGAGTCCTGCCGCAGCATGGTCAACCTCATGGAT
Seq C2 exon
CGCGACGGCAATGGCAAACTGGGCCTGGTGGAGTTCAACATCCTATGGAACCGGATCCGGAATTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010230-'22-21,'22-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
PF138331=EF-hand_8=FE(34.4=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.5=21.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCAGCGTCAAGGAGCTG
R:
CGGATCCGGTTCCATAGGATG
Band lengths:
111-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]