RnoEX6006206 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221349239-221351358:-
Coord C1 exon
chr1:221351301-221351358
Coord A exon
chr1:221349728-221349792
Coord C2 exon
chr1:221349239-221349307
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTGTTTGTTTCAGACA
3' ss Score
10.39
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GACATGGAGATCAGTGTCAAGGAGTTACAGACCATCTTGAACAGAATCATTAGCAAAC
Seq A exon
ACAAAGACCTGCGCACTAACGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT
Seq C2 exon
CGAGACGGTAATGGGAAACTGGGCCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935-'25-27,'25-25,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
PF138331=EF-hand_8=FE(34.4=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(4.4=17.4)
Main Skipping Isoform:
ENSRNOT00000028431fB2331
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAGATCAGTGTCAAGGA
R:
CAGGTAATTTCGGATGCGGTT
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]