MmuEX6030878 @ mm10
Exon Skipping
Gene
ENSMUSG00000024942 | Capn1
Description
calpain 1 [Source:MGI Symbol;Acc:MGI:88263]
Coordinates
chr19:5991856-5993931:-
Coord C1 exon
chr19:5993874-5993931
Coord A exon
chr19:5992350-5992414
Coord C2 exon
chr19:5991856-5991924
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTGTTTGTTTCAGACA
3' ss Score
10.79
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC
Seq A exon
ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT
Seq C2 exon
CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024942-'32-36,'32-34,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
PF138331=EF-hand_8=FE(34.4=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(3.4=13.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAGATCAGCGTCAAGG
R:
CAGGTAATTTCGGATGCGGTT
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types