DreEX6003637 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6554856-6557832:-
Coord C1 exon
chr7:6557775-6557832
Coord A exon
chr7:6555163-6555227
Coord C2 exon
chr7:6554856-6554924
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTTATATTCGCAGATA
3' ss Score
9.52
5' ss Seq
GACGTATCC
5' ss Score
0.98
Exon sequences
Seq C1 exon
GACATGGAGATCAGTGTGACGGAGCTACAGACGATCCTGAACAGAATCATCGCCAAAC
Seq A exon
ATAAAGATTTAAAGACAGACGGCTTTGGTAAGGAGTCGTGTCGGAGTATGATCAACCTCATGGAC
Seq C2 exon
ACGGATGGCAGTGGGAAACTCGGACTCGTAGAGTTTCATGTGTTGTGGGAGAAGATTAAACGCTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'21-19,'21-18,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
PF138331=EF-hand_8=FE(34.4=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.5=21.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAGATCAGTGTGACGG
R:
CAGGTAGCGTTTAATCTTCTCCCA
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]