BtaEX6103366 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010230 | CAPN1
Description
Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174259]
Coordinates
chr29:44068167-44069120:+
Coord C1 exon
chr29:44068167-44068250
Coord A exon
chr29:44068598-44068683
Coord C2 exon
chr29:44069046-44069120
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACATGAGCTCTGGGGAACAGGTG
3' ss Score
1.39
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
ATCTCCAGCATTCTGGACATGGAGGCTGTCACCTTCAAGAAGCTGGTGAAGGGCCACGCCTACTCTGTGACCGGGGCCAAACAG
Seq A exon
GTGAACTACCAGGGCCAGATGGTGAACCTGATCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGACAGGAGCCTGGAGTGACGG
Seq C2 exon
CTCCTCGGAGTGGAACGGCGTGGACCCTTACATGCGGGAGCAGCTCCGGGTCAAGATGGAGGATGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010230-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCTGGACATGGAGGCTG
R:
CAGAACTCCCCATCCTCCATCT
Band lengths:
152-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]