MmuEX6030872 @ mm10
Exon Skipping
Gene
ENSMUSG00000024942 | Capn1
Description
calpain 1 [Source:MGI Symbol;Acc:MGI:88263]
Coordinates
chr19:6007500-6009170:-
Coord C1 exon
chr19:6009087-6009170
Coord A exon
chr19:6008676-6008761
Coord C2 exon
chr19:6007500-6007574
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATGCACACTTTTGGGAACAGGTA
3' ss Score
4.35
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG
Seq A exon
GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG
Seq C2 exon
CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024942-'18-19,'18-17,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCGATATCCGTGATTTAGAGG
R:
CAGAACTCCCCATCCTCCATCT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types