BtaEX6103439 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44382340-44383199:-
Coord C1 exon
chr29:44383062-44383199
Coord A exon
chr29:44382520-44382681
Coord C2 exon
chr29:44382340-44382420
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGCCGGGTCCCCCTCCGCAGAGC
3' ss Score
9.85
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACGTGGACGAGTGTTTGGACGAGTCTAATTGCCGGAACGGAGTGTGTGAGAATACGCGCGGTGGTTACCGCTGTGCCTGCACTCCCCCGGCCGAGTACAGCCCGGTGCAGCGCCAGTGTCTGAGCCCAGAAGAGATGG
Seq A exon
AGCGTGCCCCGGAGCGGCGGGACGTGTGCTGGGGCCAGCGCGGAGATGACGGCATGTGTGCGGGGCCCCTGGCCGGGCCCGCCCTCACCTTCGATGACTGCTGCTGTCGCCAGGGTCGAGGTTGGGGAGCCCAGTGCCGTCCGTGCCCGCCGCGCGGCGCTG
Seq C2 exon
GGTCCCAGTGCCCGACGTCGCAGAGTGAAAGTAATTCTTTCTGGGACACGAGCCCCCTGCTGCTGGGGAAGCCCGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747-'27-32,'27-31,29-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.018 C2=0.464
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=85.1)
A:
PF0068312=TB=PU(88.1=67.3)
C2:
PF0068312=TB=PD(9.5=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAGTGTTTGGACGAGTC
R:
GGCTCGTGTCCCAGAAAGAAT
Band lengths:
188-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]